# File: /home/sinfoni/.esorex/sinfo_rec_distortion.rc
#
# Note: This configuration file has been automatically
#       generated by the esorex (v3.7.2) program.
#
# Date: 13-Nov-2009 15:05:10
#
#

# --gen-overpar
# Overwrite DRS ini parameters:.
sinfoni.general.overwrite_parameters=TRUE

# --lc_sw
# Correct for bad lines introduced by instrument software:.
sinfoni.general.lc_sw=FALSE

# --lc_kappa
# Kappa sigma value.
sinfoni.general.lc_kappa=18

# --lc_filt_rad
# Filtering radii applied during median filter. Should be small.
sinfoni.general.lc_filt_rad=3

# --product-density
# Density of pipeline products: 0 (low), 1 (low+skycor), 2 (med-QC), 3
# (high-debug).
sinfoni.product.density=2

# --lamp_flats-lo_rej
# lower rejection: percentage of rejected low intensity pixels before averaging.
sinfoni.lamp_flats.low_rejection=0.1

# --lamp_flats-hi_rej
# high rejection: percentage of rejected high intensity pixels before averaging.
sinfoni.lamp_flats.high_rejection=0.1

# --lamp_flats-interpol_index
# Interpolation index switch: indicator if the bad pixels of the flatfield
# should be interpolated.
sinfoni.lamp_flats.interpol_index=FALSE

# --lamp_flats-max_rad
# Max Rad: maximal pixel distance from bad pixel to take valid pixels.
sinfoni.lamp_flats.max_rad=4

# --lamp_flats-bad_ind
# indicator if a bad pixel mask should be generated or not.
sinfoni.lamp_flats.bad_ind=FALSE

# --lamp_flats-sigma_factor
# Sigma Factor: factor of the sigma noise limit; to remove the column intensity
# tilt only pixels which lie within a defined noise limit are used to fit a
# straight line.
sinfoni.lamp_flats.sigma_factor=5.0

# --lamp_flats-factor
# Factor: if |pixel - median| > factor * standard deviation -> then the pixel
# value is replaced by the median of the 8 nearest neighbors.
sinfoni.lamp_flats.factor=3.0

# --lamp_flats-iterations
# Iterations: number of iterations to of median filtering to find bad pixel
# clusters.
sinfoni.lamp_flats.iterations=8

# --lamp_flats-bad_lo_rej
# low rejection: Percentage for bad pixel low rejection.
sinfoni.lamp_flats.bad_low_rejection=10.0

# --lamp_flats-bad_hi_rej
# high rejection: Percentage for bad pixel high rejection.
sinfoni.lamp_flats.bad_high_rejection=10.0

# --lamp_flats-llx
# Lower Lext X corner.
sinfoni.lamp_flats.llx=1350

# --lamp_flats-lly
# Lower Lext Y corner.
sinfoni.lamp_flats.lly=1000

# --lamp_flats-rrx
# Upper right X corner.
sinfoni.lamp_flats.urx=1390

# --lamp_flats-ury
# Upper right Y corner.
sinfoni.lamp_flats.ury=1200

# --lamp_flats-tresh_ind
# Treshold index:.
sinfoni.lamp_flats.thresh_ind=FALSE

# --lamp_flats-mean_factor
# Mean Factor: factor to the clean standard deviation to define the threshold
# deviation from the clean mean.
sinfoni.lamp_flats.mean_factor=10.0

# --lamp_flats-qc_fpn_xmin1
# qc_fpn_xmin1.
sinfoni.lamp_flats.qc_fpn_xmin1=512

# --lamp_flats-qc_fpn_xmax1
# qc_fpn_xmax1.
sinfoni.lamp_flats.qc_fpn_xmax1=1536

# --lamp_flats-qc_fpn_ymin1
# qc_fpn_ymin1.
sinfoni.lamp_flats.qc_fpn_ymin1=512

# --lamp_flats-qc_fpn_ymax1
# qc_fpn_ymax1.
sinfoni.lamp_flats.qc_fpn_ymax1=1536

# --lamp_flats-qc_fpn_xmin2
# qc_fpn_xmin2.
sinfoni.lamp_flats.qc_fpn_xmin2=1350

# --lamp_flats-qc_fpn_xmax2
# qc_fpn_xmax2.
sinfoni.lamp_flats.qc_fpn_xmax2=1390

# --lamp_flats-qc_fpn_ymin2
# qc_fpn_ymin2.
sinfoni.lamp_flats.qc_fpn_ymin2=1000

# --lamp_flats-qc_fpn_ymax2
# qc_fpn_ymax2.
sinfoni.lamp_flats.qc_fpn_ymax2=1200

# --lamp_flats-qc_thresh_min
# qc_thresh_min.
sinfoni.lamp_flats.qc_thresh_min=0

# --lamp_flats-qc_thresh_max
# qc_thresh_max.
sinfoni.lamp_flats.qc_thresh_max=49000

# --bp-method
# Data reduction method:. <Normal | Linear | Noise>
sinfoni.bp.method=Normal

# --bp_dist-s_factor
# Threshold Sigma Factor: to remove the column intensity tilt only pixels which
# lie within a defined noiselimit are used to fit a straight line.
sinfoni.bp_dist.sigma_factor=2.0

# --bp_dist-method_ind
# Bad pixel Method Index1: median of nearest neighbors,2: absolute distances
# check, 3: mean of nearest spectral neighbors.
sinfoni.bp_dist.method_index=1

# --bp_dist-fct
# Factor: if |pixel - sinfo_median| > factor * standard deviation -> then the
# pixel value is replaced by the median of the 8 nearest neighbors.
sinfoni.bp_dist.factor=999.0

# --bp_dist-it
# Iterations: number of iterations to of median filtering to find bad pixel
# clusters.
sinfoni.bp_dist.iterations=8

# --bp_dist-lo_rej
# low_rejection: percentage of rejected low intensity pixels before averaging.
sinfoni.bp_dist.low_rejection=0.1

# --bp_dist-hi_rej
# high_rejection: percentage of rejected high intensity pixels before averaging.
sinfoni.bp_dist.high_rejection=0.1

# --bp_dist-llx
# llx: to compute image statistics on a rectangularzone of the image the
# coordinates of the rectangle are needed:lower left x coordinate.
sinfoni.bp_dist.llx=1350

# --bp_dist-lly
# lly: to compute image statistics on a rectangularzone of the image the
# coordinates of the rectangle are needed:lower left y coordinate.
sinfoni.bp_dist.lly=1000

# --bp_dist-urx
# urx: to compute image statistics on a rectangularzone of the image the
# coordinates of the rectangle are needed:upper right x coordinate.
sinfoni.bp_dist.urx=1390

# --bp_dist-ury
# ury: to compute image statistics on a rectangularzone of the image the
# coordinates of the rectangle are needed:upper right y coordinate.
sinfoni.bp_dist.ury=1200

# --bp_dist-thr_ind
# Threshold Index: indicator that indicates if the values beyond a threshold
# deviation from the mean are flagged as bad pixels.
sinfoni.bp_dist.threshold_index=TRUE

# --bp_dist-mean_fct
# Mean Factor: factor to the clean standard deviation to define the threshold
# deviation from the clean mean.
sinfoni.bp_dist.mean_factor=999.0

# --bp_dist-min_cut
# the minimum value of real data.
sinfoni.bp_dist.min_cut=0.1

# --bp_dist-max_cut
# the minimum value of real data.
sinfoni.bp_dist.max_cut=5e+04

# --stack-lo_rej
# lower rejection.
sinfoni.stacked.low_rejection=0.1

# --stack-hi_rej
# higher rejection.
sinfoni.stacked.high_rejection=0.1

# --stack-flat_ind
# Flat Index:.
sinfoni.stacked.flat_index=TRUE

# --stack-mflat_norm_smooth
# Normalize master flat to its smoothed value (to remove lamp response curve). 0
# (no smooth). 1 (apply fft filter along y).2 (apply running median filter
# along y).
sinfoni.stacked.mflat_norm_smooth=0

# --stack-mflat_smooth_rad
# Normalization smoothing radii.
sinfoni.stacked.mflat_smooth_rad=16

# --stack-mask_ind
# BP Mask Interpolation Switch: indicates if the bad pixel mask should be
# applied (1) or not (0).
sinfoni.stacked.mask_index=1

# --stack-ind_ind
# indicates if the bad pixels should be indicated (yes) or interpolated (no).
sinfoni.stacked.ind_index=FALSE

# --stack-mask_rad
# Max distance bad-good pix:.
sinfoni.stacked.mask_rad=4

# --stack-gauss_ind
# Gaussian Convolution Switch:.
sinfoni.stacked.gauss_index=FALSE

# --stack-khw
# Kernel Half Width.
sinfoni.stacked.kernel_half_width=2

# --stack-warpfix_ind
# Warp Fix Index:.
sinfoni.stacked.warpfix_ind=TRUE

# --stack-warpfix_kernel
# Warpfix kernel:. <tanh | sinc | sinc2 | lanczos | hamming | hann>
sinfoni.stacked.warpfix_kernel=tanh

# --stack-qc_thresh_min
# qc_thresh_min.
sinfoni.stacked.qc_thresh_min=0

# --stack-qc_thresh_max
# qc_thresh_max.
sinfoni.stacked.qc_thresh_max=49000

# --stack-sub_raw_sky
# indicates if the raw sky frame should be subtracted (TRUE) or (FALSE).
sinfoni.stacked.sub_raw_sky=TRUE

# --dist-calib_indicator
# Calib Indicator: FALSE: if the dispersion relation is already known, the
# routine can jump to the waveMap section TRUE: if the dispersion relation
# must first be determined.
sinfoni.distortion.calib_indicator=TRUE

# --dist-min_diff_mean_med_col_int
# Minimum Of Difference: minimum difference of mean and median column intensity
# to carry out the cross correlation.
sinfoni.distortion.min_diff_mean_med_col_int=10.0

# --dist-hw
# Half Width: half width of a box within which the line must be placed.
sinfoni.distortion.half_width=7

# --dist-sigma
# Sigma: sigma of Gaussian which is convolved with the artificial spectrum
# generated using the line list.
sinfoni.distortion.sigma=2.0

# --dist-fwhm
# FWHM: initial guess value for the fwhm of the Gaussian used for the line fit.
sinfoni.distortion.fwhm=2.83

# --dist-min_amplitude
# Minimum Of Amplitude: of the Gaussian to do the fit.
sinfoni.distortion.min_amplitude=5.0

# --dist-max_residual
# Maximum Residuals value: beyond this value the fit is rejected.
sinfoni.distortion.max_residual=0.5

# --dist-n_a_coeffs
# Number of A coefficients: number of polynomial coefficients for the dispersion
# relation.
sinfoni.distortion.n_a_coefficients=4

# --dist-n_b_coeffs
# Number of B coefficients: number of polynomial coefficients for the polynomial
# fit of the dispersion coefficients.
sinfoni.distortion.n_b_coefficients=2

# --dist-sigma_factor
# Sigma Factor: Factor of the standard deviation of the polynomial coefficients
# of the dispersion relation beyond which the coefficients are not used for
# the fit.
sinfoni.distortion.sigma_factor=1.5

# --dist-wcoeff_ind
# Write Coefficients Index: indicates if the coefficients should be written into
# a file or not.
sinfoni.distortion.write_coeffs_ind=TRUE

# --dist-par_ind
# Write Parameter Index: indicates if the fit parameters should be written into
# a file or not.
sinfoni.distortion.write_par_ind=TRUE

# --dist-pixel_dist
# Minimal Slitlets's Distance in spectral direction.
sinfoni.distortion.pixel_dist=15

# --dist-pixel_tol
# Pixel Tolerance: allowed pixel position tolerance between estimated and fitted
# line position.
sinfoni.distortion.pixel_tol=5.0

# --dist-wave_map_ind
# Wavelength Map Indicator: indicates if the wavelength calibration map should
# be generated (TRUE) or not (FALSE).
sinfoni.distortion.wave_map_ind=FALSE

# --dist-mag_factor
# Magnificator Factor: magnifying factor for the number of pixels in the columns
# needed for FFT.
sinfoni.distortion.mag_factor=8

# --dist-slit_pos_ind
# Slit Position Indicator: indicates if the fits of the slitlet edge positions
# should be carried through or not.
sinfoni.distortion.slit_pos_indicator=TRUE

# --dist-fit_boltz_ind
# Fit Boltzmann Indicator: indicates if the fits of the slitlet edge positions
# is carried trough by using a Boltzmann function as model function.
sinfoni.distortion.fit_boltz_indicator=TRUE

# --dist-fit_edge_ind
# Fit Edge Indicator: indicates if the fits of the slitlet edge positions is
# carried through by using a simple edge function as model function.
sinfoni.distortion.fit_edge_indicator=FALSE

# --dist-estimate_ind
# Estimate Indicator: indicates if the fits of the slitlet edge positions is
# carried through by using a list of estimated guess positions in a file
# (TRUE)or if the initial positions are calculated automatically (FALSE). The
# estimation case is more stable.
sinfoni.distortion.estimate_indicator=FALSE

# --dist-box_len
# Box Length: pixel length of the row box within which the fit is carried out.
sinfoni.distortion.box_length=32

# --dist-y_box
# Y Box: half width of a small box in spectral direction within which the
# maximal intensity pixel is searched.
sinfoni.distortion.y_box=5.0

# --dist-diff_toll
# Difference Tolearance: maximal tolerable difference of the resulting fit
# positions of the slitlet edges with respect to the expected positions.
sinfoni.distortion.diff_tol=2.0

# --dist-qc_thresh_min
# qc_thresh_min.
sinfoni.distortion.qc_thresh_min=0

# --dist-qc_thresh_max
# qc_thresh_max.
sinfoni.distortion.qc_thresh_max=49000

# --ns-lo_rejection
# lower rejection: percentage of rejected low intensity pixels before averaging.
sinfoni.distortion.lower_rejection=0.1

# --ns-hi_rejection
# higher rejection: percentage of rejected high intensity pixels before
# averaging.
sinfoni.distortion.higher_rejection=0.1

# --ns-mask_ind
# Mask Index: indicator if a bad pixel mask is applied or not.
sinfoni.distortion.mask_ind=FALSE

# --ns-gauss_ind
# Gauss Index:.
sinfoni.distortion.gauss_ind=FALSE

# --ns-khw
# Kernel Half Width kernel half width of the Gaussian response function.
sinfoni.distortion.kernel_half_width=2

# --ns-hw
# Half Width.
sinfoni.distortion.ns_half_width=4

# --ns-fwhm
# FWHM.
sinfoni.distortion.ns_fwhm=2.0

# --ns-min_diff
# Minimum of Difference.
sinfoni.distortion.min_diff=1.0

# --ns-dev_tol
# Dev Tol.
sinfoni.distortion.dev_tol=20.0

# --arcs_thresh_factor
# arcs threshold factor. median_value(image)+ kappa*sigma is the minimum
# intensity threshold of accepted imagepixels.
sinfoni.distortion.arcs_thresh_factor=0.33333

# --arcs_min_arclen_factor
# factor which sets minimum arc length (1.0-2).
sinfoni.distortion.arcs_min_arclen_factor=1.19

# --arcs_window_size
# Size of window for low pass fileter used inan horizzontal low pass filter to
# remove unwanted arcs (5-64).
sinfoni.distortion.arcs_window_size=14

# --smooth_rad
# Size of smoothing factor (1-11) used to prevent for possible intensity drops
# from detector electronics on fibre illuminated slitlets (1-11).
sinfoni.distortion.smooth_rad=3

# --ns-lo_rej
# lower rejection: percentage of rejected low intensity pixels before averaging.
sinfoni.north_south_test.low_rejection=0.1

# --ns-hi_rej
# higher rejection: percentage of rejected high intensity pixels before
# averaging.
sinfoni.north_south_test.high_rejection=0.1

# --ns-mask_ind
# Mask Index: indicator if a bad pixel mask is applied or not.
sinfoni.north_south_test.mask_ind=FALSE

# --ns-gauss_ind
# Gauss Index:.
sinfoni.north_south_test.gauss_ind=FALSE

# --ns-khw
# Kernel Half Width kernel half width of the Gaussian response function.
sinfoni.north_south_test.kernel_half_width=2

# --ns-hw
# Half Width.
sinfoni.north_south_test.half_width=4

# --ns-fwhm
# FWHM.
sinfoni.north_south_test.fwhm=2.0

# --ns-min_diff
# Minimum of Difference.
sinfoni.north_south_test.min_diff=1.0

# --ns-dev_tol
# Dev Tol.
sinfoni.north_south_test.dev_tol=20.0

#
# End of file