VLT Instrument Pipelines

Latest News:

Mar 3, 2021: Molecfit Pipeline 4.0.0 released!

Molecfit 4.0.0 is a major release which adds
support for multiple chips and wavelength ranges, expert mode and modified Reflex workflows.

Mar 3, 2021: KMOS Pipeline 4.0.0 released!

KMOS 4.0.0 is a major release which updates KMOS for
Telluriccorr v4.0.0 - support for multiple chips and wavelength ranges
.

Mar 3, 2021: ESPRESSO Pipeline 2.3.0 released!

ESPRESSO 1.3.0 release updates the extraction routine to handle cosmics detected by van-Dokkum method
.

Mar 3, 2021: ESPRESSO-DAS Pipeline 1.3.0 released!

The ESPRESSO Data Analysis Software 1.3.0 release supports input ESPRESSO pipeline products in Phase 3 standard format
.

Feb 1, 2021: MUSE Pipeline 2.8.4 released!

MUSE 2.8.4 is a maintenance release which addresses issues in the Reflex workflows and provides an
improved computation of the effective spatial resolution for NFM observations if the final data cube
is saved as SDP compliant product.

Nov 18, 2020: VIMOS Pipeline 4.1.1 released!

Features: proper determination of efficiency mask for all grisms, fixed XCode 12 build problem, plus updated undeviated wavelengths.

Oct 14, 2020: FORS Pipeline 5.5.6 released!

FORS 5.5.6 can be compiled with gcc 10, which is the default compiler for Fedora 32. Read more...

Known Issues:

  • When using the source kit installation, please note that the VISIR pipeline package can currently
    not be built using the GCC 10 compiler.
    This causes problems on platforms where GCC 10 is now the default compiler, for instance on Fedora 32.
  • When using the source kit installation on macOS together with the recently released Xcode 12, the
    installation process may be aborted. To work around this issue the environment variable CC should
    be set like (bash syntax)

    export CC="gcc -w"

    before running the installer script. Once the installation is complete, the environment variable
    should be unset again.

To get announcements of new pipeline releases, send an email to eso-pipelines-announce-join@eso.org.

Getting Started

  1. Install the pipeline(s) using RPM packages, MacPorts packages or Source Kits.
  2. Detailed usage information can be found in the individual user manuals and tutorials available here

Three Ways to Run a Pipeline

  1. EsoReflex is the recommended environment to reduce ESO data. It automatically organizes input files according to their category and runs the entire reduction chain at the push of a button. It supports break points in the reduction sequence in order to inspect and interact with intermediate and final products and rerun the corresponding step if necessary.
  2. Gasgano is a Java-based data file organizer developed and maintained by ESO. It can be used to manage and organize in a systematic way the astronomical data observed and produced by all VLT compliant telescopes. Gasgano is a graphics-based software tool for organising and viewing data files produced by the VLT Control System. Gasgano offers functionalities for data viewing, grouping, sorting, classification, searching, and filtering of data. And, of course, Gasgano will run any requested CPL recipe on the selected data.
  3. EsoRex, a command-line utility for running pipeline recipes is also available. It may be embedded by users at their home institute into data reduction scripts for the automation of processing tasks.
The underlying algorithms and recipes are the same for a given instrument pipeline, irrespective if EsoReflex, Gasgano or Esorex is used.

Installation Instructions

Fedora, CentOS, Scientific Linux and macOS

Currently ESO provides binary packages for:

  • Fedora (28 to 31)
  • CentOS 7
  • Scientific Linux 7
  • macOS (10.11 to 10.15)
Users of those systems are encouraged to install the Instrument Pipeline packages using the RPM packages or the MacPorts packages respectively.
Please follow the installation instructions for RPM packages or MacPorts packages.

Source Kit package installation

Users of operating systems for which no RPM or MacPorts packages are currently available should follow the instructions in this section.

Software pre-requisites

Please consult the Software Prerequisites page before installing the pipelines or EsoReflex from source.

EsoReflex based Pipeline Installations

For an installation of pipeline packages with EsoReflex support please follow the instructions in this section.

Installations without EsoReflex

If you want to install pipeline packages without EsoReflex support please follow the instruction in this section. It applies to all pipeline packages.

  • Download the desired pipeline kit(s) from the Source Kit column in the table below into an empty, temporary directory.
  • Download the Source Kit installer into the same directory.
  • If necessary, make it executable: chmod u+x install_pipelinekit
  • Execute the command: ./install_pipelinekit *-kit-*.*
  • After the installation the temporary directory with its contents can be deleted.

Instrument Pipeline Packages

Table rows marked with a blue background indicate EsoReflex workflow availability.
Instrument Release Notes Source Kit User Manual Cookbook Additional Documents Additional Datasets EsoReflex Tutorials/Cookbooks Status
AMBER 2020-04-01 4.4.0 4.4.0
End of maintenance
CRIRES 2020-05-25 2.3.11 1.13
Operational on hold
DETMON 2020-02-03 1.3.6 1.3.5
Operational on hold
EFOSC 2020-11-23 2.3.6 1.1
Demo Data
Tutorial: 1.4 (EFOSC-IMG)
Tutorial: 1.4 (EFOSC-MOS)
Demo Data: 0.1
End of maintenance
ESOTK 2020-05-26 0.9.1 0.9.1
Tutorial: 0.9.1
Demo Data: 0.9
ESPRESSO-DAS 2021-03-03 1.3.0 1.3.0
Tutorial: 1.3.0
Demo Data: 0.9.5
ESPRESSO 2021-03-03 2.3.0 2.3.0
Static Calibration WAVE & DLL Matrixes (423 MB)
Tutorial: 2.3.0
Demo Data: 0.4.0
FORS 2020-10-08 5.5.6 5.12
Demo Data (29 MB)
Tutorial: 1.5 (FORS-IMG)
Tutorial: 1.5 (FORS-PMOS)
Tutorial: 1.23 (FORS-SPEC)
Demo Data: 0.8
Operational on hold
GIRAFFE 2020-05-21 2.16.7 2.16.7
Standard Calibration Files page
Tutorial: 1.4
Demo Data: 0.3
Operational on hold
GRAVITY 2020-11-01 1.4.1 1.4.0
Tutorial: 1.4.0
Demo Data: 0.7
HAWKI 2020-05-22 2.4.8 2.4.8
Tutorial: 2.4.8
Demo Data: 0.5
Operational on hold
ISAAC 2020-05-20 6.1.9 1.4
Static Calibration Files (50 MB)
End of maintenance
KMOS 2021-03-01 4.0.0 3.6
Tutorial: 5.1
Demo Data: 2.2.0
MATISSE 2020-05-06 1.5.1 1.5.1
Tutorial: 1.5.1
Demo Data: 0.4
MIDI 2019-04-01 2.9.1 2.9.1
End of maintenance
MOLECFIT 2021-02-01 4.0.0 4.1
Tutorial: 3.0.3
Demo Data: 1.4
MUSE 2021-01-29 2.8.4 2.8.4
MUSE IFU 6 trace tables
Leagacy MUSE static calibrations
Tutorial: 16.0 (muse)
Tutorial: 5.0 (muse-zap)
Demo Data: 1.6
NACO 2020-02-03 4.4.9 1.1
Operational on hold
SINFONI 2020-05-20 3.3.0 3.3.0
ADA IV 2006 paper
Calibration Database Example (255 MB)
Demonstration Package (1.2 GB)
Tutorial: 3.2.7
Demo Data: 0.3
End of maintenance
SOFI 2020-11-24 1.5.12 1.2
End of maintenance
SPHERE 2020-06-02 0.40.0 1.40
Tutorial: 1.3 (ifs)
Tutorial: 1.2 (ird-img)
Tutorial: 1.2 (ird-lss)
Tutorial: 1.2 (zpl-img)
Tutorial: 1.2 (zpl-pol)
Demo Data: 1.4
UVES 2020-05-20 6.1.3 6.1.3 (UVES)
6.1.3 (UVES-FIBRE)
Demonstration Package (2.0 GB)
Old Standard Star Calibration Data
Tutorial: 6.1.3 (UVES)
Tutorial: 6.1.3 (UVES-FIBRE)
Demo Data: 4.5
Operational on hold
VIRCAM 2020-05-20 2.3.6 2.3.6
Tutorial: 2.3.6
Demo Data: 0.1
Operational on hold
VIMOS 2020-11-18 4.1.1 8.0
Tutorial: 2.6 (VIMOS-IFU)
Tutorial: 1.0 (VIMOS-IMA)
Tutorial: 2.3 (VIMOS-MOS)
Demo Data: 0.5
Operational on hold
VISIR 2020-05-20 4.3.10 1.7
Tutorial: 1.2
Demo Data: 0.3
Operational on hold
XSHOOTER 2020-05-22 3.5.0 3.5.0
Additional NIR telluric model calatog (190 MB)
Tutorial: 3.5.0
Demo Data: 1.3
Operational on hold

Pipelines Status

The pipeline status determines the level of ESO support in fixing the software. For any help with installation and usage of a pipeline, please contact the helpdesk ticketing system (e-mail to usd-help@eso.org or "Ask for help" link in he User Portal homepage). ESO internal (operations) users should request support from the pipeline developers team using JIRA. Here are the possible entries:
  • Active: Pipelines that are affected by a data product upgrade are considered active in the sense that a project team is actively working on them. These pipelines are fully supported and have the highest priority for support. The support consists in prompt evaluation of all requests.
  • Operational on hold: Pipelines that are on hold are not under active development and are of lower priority for support. Pipelines are put into this status when they are considered to be essentially completed, i.e. no enhancements or upgrades are currently under way. The software support consists in porting these pipelines to new CPL versions, carrying out emergency repairs and fixing trivial problems. The User Support Department will evaluate and answer if possible the requests for help received via helpdesk (usd-help@eso.org), but by default there will be no available support from pipeline developers.
  • End of maintenance: Pipelines in this status are the lowest priority for support. The only work performed on these pipelines is to make sure they can still run in the current ESO environment. The User Support Department evaluates and answers if possible the requests for help received via helpdesk (usd-help@eso.org). Tickets reporting problems on the pipeline will not receive any software support.


Additional tools for data visualisation and analysis.
Release Information Release File
Includes CPL,Gasgano,EsoRex,
and static calibration data
Users Manual and Documentation Data Sets
Sky Correction and Modeling Tools Molecfit (legacy versions)

The skytools webpages provide access to the most recent information and software packages.

Please note that the Molecfit packages available on the skytools webpages are no longer supported!
Please use the new version available here instead.


Publications, Reference Documents, and Links

A list of Data Reduction Frequently Asked Questions is available.

The ESO Quality Control Group processes VLT data and monitors the instrument and data quality. They provide an overview of data and data processing on their web pages.

If you make use of EsoReflex workflows in a scientific publication, please consider citing EsoReflex. You may reference the following paper: Automated Data Reduction Workflows for Astronomy: The ESO Reflex Environment, 2013, Freudling, W., et al., Astron.Astrophys., 559, A96 (Bibtex entry)

A collection of Science Software related documentation (Development standards, deliverables specification, etc.) are available here